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  • https://en.wikipedia.org/wiki/Nucleation
    Nucleation
    In thermodynamics, nucleation is the first step in the formation of either a new thermodynamic phase or structure via self-assembly or self-organization within a substance or mixture. Nucleation is typically defined to be the process that determines how long an observer has to wait before the new phase or self-organized structure appears. For example, if a volume of water is cooled (at atmospheric pressure) below 0 °C, it will tend to freeze into ice, but volumes of water cooled only a few degrees below 0 °C often stay completely free of ice for long periods (supercooling). At these conditions, nucleation of ice is either slow or does not occur at all. However, at lower temperatures nucleation is fast, and ice crystals appear after little or no delay.Nucleation is a common mechanism which generates first-order phase transitions, and it is the start of the process of forming a new thermodynamic phase. In contrast, new phases at continuous phase transitions start to form immediately. Nucleation is often very sensitive to impurities in the system. These impurities may be too small to be seen by the naked eye, but still can control the rate...
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  • https://en.wikipedia.org/wiki/Basal_body
    Basal body
    A basal body (synonymous with basal granule, kinetosome, and in older cytological literature with blepharoplast) is a protein structure found at the base of a eukaryotic undulipodium (cilium or flagellum). The basal body was named by Theodor Wilhelm Engelmann in 1880 It is formed from a centriole and several additional protein structures, and is, essentially, a modified centriole. The basal body serves as a nucleation site for the growth of the axoneme microtubules. Centrioles, from which basal bodies are derived, act as anchoring sites for proteins that in turn anchor microtubules, and are known as the microtubule organizing center (MTOC). These microtubules provide structure and facilitate movement of vesicles and organelles within many eukaryotic cells. Assembly, structure Cilia and basal bodies form during quiescence or the G1 phase of the cell cycle. Before the cell enters G1 phase, i.e. before the formation of the cilium, the mother centriole serves as a component of the centrosome. In cells that are destined to have only one primary cilium, the...
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  • https://en.wikipedia.org/wiki/Obsidian
    Obsidian
    Obsidian () is a naturally occurring volcanic glass formed when lava extruded from a volcano cools rapidly with minimal crystal growth. It is an igneous rock.Obsidian is produced from felsic lava, rich in the lighter elements such as silicon, oxygen, aluminium, sodium, and potassium. It is commonly found within the margins of rhyolitic lava flows known as obsidian flows. These flows have a high content of silica, granting them a high viscosity. The high viscosity inhibits diffusion of atoms through the lava, which inhibits the first step (nucleation) in the formation of mineral crystals. Together with rapid cooling, this results in a natural glass forming from the lava.Obsidian is hard, brittle, and amorphous; it therefore fractures with sharp edges. In the past, it was used to manufacture cutting and piercing tools, and it has been used experimentally as surgical scalpel blades. Origin and properties The Natural History by the Roman writer Pliny the Elder includes a few sentences about a volcanic glass called obsidian (lapis obsidianus), discovered in Ethiopia by Obsidius...
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  • https://arxiv.org/abs/1107.1622
    Structural transformation in supercooled water controls the crystallization rate of ice
    One of water's unsolved puzzles is the question of what determines the lowest temperature to which it can be cooled before freezing to ice. The supercooled liquid has been probed experimentally to near the homogeneous nucleation temperature TH{approx}232 K, yet the mechanism of ice crystallization - including the size and structure of critical nuclei - has not yet been resolved. The heat capacity and compressibility of liquid water anomalously increase upon moving into the supercooled region according to a power law that would diverge at Ts{approx}225 K,(1,2) so there may be a link between water's thermodynamic anomalies and the crystallization rate of ice. But probing this link is challenging because fast crystallization prevents experimental studies of the liquid below TH. And while atomistic studies have captured water crystallization(3), the computational costs involved have so far prevented an assessment of the rates and mechanism involved. Here we report coarse-grained molecular simulations with the mW water model(4) in the supercooled regime around TH, which reveal that a sharp increase in the fraction of four-coordinated molecules in supercooled liquid water explains its anomalous thermodynamics and also controls the rate and mechanism of ice formation. The simulations reveal that the crystallization rate of water reaches a maximum around 225 K, below which ice nuclei form faster than liquid water can equilibrate. This implies a lower limit of metastability of liquid water just below TH and well above its glass transition temperature Tg{approx}136 K. By providing a relationship between the structural transformation in liquid water, its anomalous thermodynamics and its crystallization rate, this work provides a microscopic foundation to the experimental finding that the thermodynamics of water determines the rates of homogeneous nucleation of ice.(5)
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    https://ui.adsabs.harvard.edu/abs/2011Natur.479..506M
    Structural transformation in supercooled water controls the crystallization rate of ice
    One of water's unsolved puzzles is the question of what determines the lowest temperature to which it can be cooled before freezing to ice. The supercooled liquid has been probed experimentally to near the homogeneous nucleation temperature, TH~232K, yet the mechanism of ice crystallization--including the size and structure of critical nuclei--has not yet been resolved. The heat capacity and compressibility of liquid water anomalously increase on moving into the supercooled region, according to power laws that would diverge (that is, approach infinity) at ~225K (refs 1, 2), so there may be a link between water's thermodynamic anomalies and the crystallization rate of ice. But probing this link is challenging because fast crystallization prevents experimental studies of the liquid below TH. And although atomistic studies have captured water crystallization, high computational costs have so far prevented an assessment of the rates and mechanism involved. Here we report coarse-grained molecular simulations with the mW water model in the supercooled regime around TH which reveal that a sharp increase in the fraction of four-coordinated molecules in supercooled liquid water explains its anomalous thermodynamics and also controls the rate and mechanisms of ice formation. The results of the simulations and classical nucleation theory using experimental data suggest that the crystallization rate of water reaches a maximum around 225K, below which ice nuclei form faster than liquid water can equilibrate. This implies a lower limit of metastability of liquid water just below TH and well above its glass transition temperature, 136K. By establishing a relationship between the structural transformation in liquid water and its anomalous thermodynamics and crystallization rate, our findings also provide mechanistic insight into the observed dependence of homogeneous ice nucleation rates on the thermodynamics of water.
    UI.ADSABS.HARVARD.EDU
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  • https://ui.adsabs.harvard.edu/abs/1996Natur.381...56B
    Control of crystal phase switching and orientation by soluble mollusc-shell proteins
    IN the initial stages of the biomineralization of abalone shells, a primer layer of oriented calcite crystals grows on a nucleating protein sheet1,2. The deposition of this primer is followed by an abrupt transition to c-axis-oriented crystals of aragonite, another crystalline form of calcium carbonate. The formation of each of the two crystal types is accompanied by the synthesis of specific polyanionic proteins1-3, suggesting that cooperative interactions between these proteins and the inorganic ions during crystal nucleation and growth control the phase of the deposited mineral and that differential expression of the proteins allows the organism to induce phase changes. It is known that soluble shell proteins can control crystal morphology4-10, but it has been suspected that the switch in phase-from calcite to aragonite-might require the deposition of a new nucleating protein sheet. Here we describe in vitro studies of the crystallization of calcium carbonate in the presence of soluble polyanionic proteins extracted from abalone shell. We find that these proteins alone are sufficient to control the crystal phase, allowing us to switch abruptly and sequentially between aragonite and calcite without the need for deposition of an intervening protein sheet. These results show that soluble organic components can exert greater control over hierarchical biomineral growth than hitherto suspected, offering the prospect of similar phase control in materials chemistry.
    UI.ADSABS.HARVARD.EDU
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  • Nucleation is the process of forming a nucleus, or seed, from which a new phase of matter can grow. It is the first step in the formation of a new material, such as a crystal or droplet. Nucleation occurs when atoms, molecules, or ions come together and form a small cluster that has enough energy to start growing and expanding into the new phase of matter. Nucleation can occur spontaneously or be induced by an external force, such as temperature change or pressure.

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